PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g026120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 452aa    MW: 50335.1 Da    PI: 9.3884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g026120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-066991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F+r  nL+ H r H
  Csa04g026120.1 69 FICEICNKGFKRDQNLQLHRRGH 91
                    89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-66891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-76891No hitNo description
PROSITE profilePS5015710.8666991IPR007087Zinc finger, C2H2
SMARTSM003550.0116991IPR015880Zinc finger, C2H2-like
PfamPF121711.7E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM0035597111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-7141166No hitNo description
SMARTSM00355200146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MMMPDDHHHQ LSFPSYVLHQ EHITPNPNPN PNPSSSNSAK RKRNLPGNPD PDAEVIALSP  60
NSLMATNRFI CEICNKGFKR DQNLQLHRRG HNLPWKLKQR TNKDQIKKKV YICPEKTCVH  120
HDPGRALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVMSD WKAHSKICGT REYRCDCGTL  180
FSRKDSFITH RAFCDALAEE SARFVSVPPA AASATPAYLH NAPDAEVNLG NINQNHQHGH  240
TTSSQLDQPG FNNQRQTFLG QTFTNQLPIQ PNVYASPSTR SASDSLQNLW HLQGQSSHQW  300
LLNENNNNNI LQRGISKNEE EHEIKKVVTS GSLFSSEALN NANDYSQNGG QIASMSATAL  360
LQKAAQMGSK RSSSSLNNSK AFGLMSNTSI FNNKQTENMK TTEVDEGGFT RDFLGVGSQH  420
STWPLLMVNR NLLDSSPPAT TDGTPTPDRN Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283020.0AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds.
GenBankAJ6214930.0AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene).
GenBankAY1439360.0AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503173.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLR0HJJ20.0R0HJJ2_9BRAS; Uncharacterized protein
STRINGscaffold_501386.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.10.0C2H2-like zinc finger protein